These Egg Cottage Cheese Muffins are the perfect high-protein, low-carb breakfast that’s delicious and easy to make! Packed with savory mushrooms, creamy cottage cheese, and melty mozzarella, they are ideal for meal prep, grab-and-go breakfasts, or healthy snacks.
With simple ingredients and minimal prep time, this recipe is a must-try for anyone looking for a nutritious, gluten-free, and protein-rich meal. Whether you enjoy warm or cold, these muffins are satisfying, flavorful, and versatile enough for any diet plan!

PRO TIPS for the Best Egg Cottage Cheese Muffins
✔️ Use full-fat cottage cheese – This gives the muffins a rich, creamy texture and keeps them moist.
✔️ Whisk the eggs well – Properly beaten eggs create a light and fluffy texture in every bite.
✔️ Grease your muffin tin – Prevent sticking by using non-stick spray or silicone muffin liners.
✔️ Don’t overbake – Bake just until the muffins are golden and firm to avoid a dry texture.
✔️ Customize the add-ins – Add spinach, bell peppers, or crispy bacon for more variety and flavor!

Personalizing Egg Cottage Cheese Muffins with Mushrooms Recipe
One of the best things about these Egg Cottage Cheese Muffins is how customizable they are! Try these variations:
Vegetarian Twist – Add diced bell peppers, caramelized onions, or baby spinach for more veggies.
Protein Boost – Mix in cooked bacon, turkey sausage, or diced ham for extra protein.
Extra Flavor – Try garlic powder, smoked paprika, or fresh herbs for added depth.
Cheese Lover’s Edition – Swap mozzarella for cheddar, feta, or parmesan for a bolder taste.

Ingredients & Their Importance
- Eggs – The base of the muffins, providing protein and structure.
- Cottage cheese – Adds creaminess, moisture, and extra protein.
- Shredded mozzarella – Brings a melty, cheesy texture and mild flavor.
- Chopped mushrooms – Adds a savory, umami taste and texture.
- Gluten-free flour – Helps bind the mixture for a sturdier muffin.
- Chives (to taste) – Adds a mild onion flavor without overpowering the dish.
- Salt & pepper (to taste) – Enhances all the flavors!

Egg Cottage Cheese Muffins Recipe
Step 1: Prepare the Mixture
- In a large mixing bowl, combine cottage cheese, mozzarella, chopped mushrooms, chives, eggs, salt, and pepper.
- Mix until everything is well incorporated.
Step 2: Add the Flour
- Stir in the gluten-free flour, making sure to mix well until you get a smooth, even batter.

Step 3: Fill the Muffin Tin
- Grease a muffin tin with oil or use silicone liners for easy removal.
- Pour the egg mixture evenly into each cavity, filling about ¾ full.
Step 4: Add Toppings
- Sprinkle extra mozzarella cheese and chives on top for added flavor and presentation.

Step 5: Bake the Muffins
- Preheat the oven to 350°F (180°C).
- Bake for 20-22 minutes, or until the muffins are golden and firm to the touch.

Step 6: Cool & Serve
- Let the muffins cool for a few minutes before removing them from the tin.
- Enjoy warm or cold as a protein-packed meal or snack!
Other Methods of Cooking Egg Cottage Cheese Muffins with Mushrooms
Cottage cheese egg muffins air fryer
- Preheat to 325°F (160°C).
- Cook for 12-15 minutes, checking for doneness.
Stovetop Method:
- Cook in a greased non-stick pan over medium-low heat.
- Cover with a lid and cook until set, about 8-10 minutes per side.
Microwave Hack:
- Pour batter into microwave-safe silicone muffin cups.
- Microwave on high for 2-3 minutes, checking at 30-second intervals.
Different Ways to Serve
With avocado slices – A great low-carb, high-protein meal.
On a toasted English muffin – Turns it into a savory breakfast sandwich.
With a side salad – Makes a balanced, light lunch.
Dipped in marinara sauce – For an Italian-inspired twist!
How to Store Leftovers?
Refrigerate: Store in an airtight container for up to 4 days.
Freeze: Place muffins in a ziplock bag and freeze for up to 2 months.
Reheat: Microwave for 30 seconds or reheat in a toaster oven at 300°F (150°C) for 5 minutes.
Egg Cottage Cheese Muffins with Mushrooms: FAQ’s
Can I use regular flour instead of gluten-free?
Yes! You can substitute with whole wheat or oat flour for a more nutritious option when making these Egg Cottage Cheese Muffins with Mushrooms.
Can I make these muffins dairy-free?
Absolutely! Swap cottage cheese for dairy-free ricotta and use vegan cheese.
How can I make them fluffier?
For extra fluffiness, whisk the eggs separately before adding them to the mixture.
Can I make mini muffins?
Yes! Use a mini muffin tin and reduce baking time to 12-15 minutes.
Can I meal prep Egg Cottage Cheese Muffins with Mushrooms?
Definitely! These muffins are perfect for make-ahead breakfasts and easy meal prep.

Egg cottage cheese muffins and mushrooms
Ingredients
- 7 eggs
- 1 cup cottage cheese
- 1/2 cup shredded mozzarella cheese
- 11/2 cups chopped mushrooms
- 3 tbsp gluten-free flour
- Chives to taste
- Salt and pepper to taste
Instructions
- Mix the batter: In a large bowl, combine cottage cheese, mozzarella, mushrooms, chives, eggs, salt, and pepper. Mix well.
- Add flour: Stir in gluten-free flour until smooth.
- Fill muffin tin: Grease a muffin tin and pour the mixture evenly into each cup.
- Top the muffins: Sprinkle with extra mozzarella and chives.
- Bake: Preheat oven to 350°F (180°C) and bake for 20-22 minutes until golden.
- Cool & serve: Let muffins cool slightly before serving. Enjoy warm or cold!
Notes
- Vegetable options: Try adding chopped spinach, diced bell peppers, or
caramelized onions for more flavor and texture.
● Flour alternatives: If gluten-free is not necessary, you can use oat flour or
whole wheat flour for a more nutritious version.
● Mini or large muffins: Use mini muffin tins for bite-sized portions or larger
tins for a heartier version (adjust baking time accordingly).
● Storage & meal prep: Keep the muffins in the refrigerator for up to 4 days or
freeze them for up to 2 months. Reheat in the microwave or oven.
● Crunchier topping: Sprinkle crispy bacon bits or sunflower seeds on top
before baking for added texture.
● Perfect pairings : Serve with avocado, yogurt sauce, or a fresh salad to
make them part of a complete breakfast or brunch.
These Egg Cottage Cheese Muffins are a nutritious, protein-packed, and customizable meal that works for busy mornings, post-workout snacks, or meal prep. Try this easy recipe today and enjoy a fluffy, cheesy, and satisfying bite every time! 🥚🧀✨
Let me know if you’d like any adjustments!
About the Author
I am Seun, and I love to share my first-hand experience using multiple air fryers. Stick around for yummy delicacies made from the air fryer and many amazing tips on using your newfound Kitchen appliance – the air fryer!